Shaun 2009 txt

You must see how disappointing this is. Do you have any idea how difficult this makes things for me? Player Default: That will now be significantly harder. You know, in all my years, I've never set foot outside the Institute. Not once, since the day they brought me here. I've never had a reason.

Shaun: But now The Commonwealth is There's no future here. Shaun: Standing here, I'm reminded of how fortunate I am that I was spared a life in this wasteland. Shaun: I'll admit, when I had you released from Vault , I had no expectations that you'd survive out here, in all this. Shaun: Certainly it was no longer necessary to keep you suspended Well, I suppose I wanted to see what would happen. Shaun: I was the perfect candidate; an infant with uncorrupted DNA.

But if something were to go wrong Shaun: Well, the Institute realized a contingency plan was prudent. Another source of pre-war DNA, preferably related to their primary subject. Shaun: It only made sense that my parents should fill that role. So, you were kept alive and safe within the Vault. I'll admit, when I had you released from Vault , I had no expectations that you'd survive out here, in all this.

And after, there was initially no You must understand, though I have had no love to feel. We have been strangers until now, you and I. Would you even survive? Shaun: Perhaps most curious to me Now I know the answer. I disagree. It's important that you understand the work that is necessary to maintain the Institute. They're machines, artificial! They're incapable of being afraid! Shaun: This was such a simple task, I just don't understand.

I know you're capable of handling yourself. Player Default: So a few synths so missing. It's not the end of the world That is an unacceptable outcome. It makes things difficult. Everything you've seen, all that you've learned. You're just going to walk away? Player Default: Let's not forget our roles here, son. At the end of the day, I'm still your father. I am also not a child, and have a tremendous amount of responsibility for the Institute.

It would be such a poor decision on your part, I had not given it much thought. Shaun: I had hoped we could be something like a family again. I hoped you shared our vision for the future. Shaun: I'm afraid there's no room for sentimentality, father. If you are not with us, then you are against us.

Shaun: They no doubt mean to "free" these synths, in their delusion that synths are somehow sentient beings. Player Default: You dealt with Libertalia. That's the result of their selfish, short-sighted plan. Shaun: We have learned the current location of these synths, and need to re-acquire them before the Railroad can hide them. I know full well they were instrumental in your reaching the Institute. Player Default: An admirable goal. And yet we find ourselves in a situation where something more significant must be done.

The group that calls themselves "The Railroad" has acquired several synths from the Institute, synths that had gone missing in recent months. Shaun: The group that calls themselves "The Railroad" has acquired several synths from the Institute, synths that had gone missing in recent months.

We have learned the current location of these synths, and need to re-acquire them before the Railroad can hide them. Shaun: But it's important that we act on this soon, before the Railroad has any indication we've tracked them. Aside from taking back our property, we must teach them a lesson, as it were. And quickly, at that. But it's important that we act on this soon, before the Railroad has any indication we've tracked them.

Shaun: We also don't want the Brotherhood of Steel getting wind of the presence of the synths. That would only complicate matters. We also don't want the Brotherhood of Steel getting wind of the presence of the synths.

Keep that in mind. A Courser will be waiting for you outside Bunker Hill. You'll have support should you need it, but we want to keep this small. An admirable goal. Shaun: As I'm sure several of you are already aware, I have been under Doctor Volkert's care for some time. As I'm sure several of you are already aware, I have been under Doctor Volkert's care for some time. Shaun: Our best efforts have failed. Every experimental treatment we could devise has been unsuccessful.

Our best efforts have failed. Player Default: The only thing that matters now is continuing the Institute's work. It will be all right, I assure you. Shaun: The Institute cannot survive without leadership.

The Directorate must continue to govern with the best interests of all in mind. The Institute cannot survive without leadership.

I've had the same thought more than a few times. But we cannot let this stop us. Our work must continue. I'm afraid so. A very aggressive form of cancer. Believe me when I say we've done everything we can. Given that some of us have apparently lost interest in this meeting, I think we'll adjourn for now. Shaun: It's clear that our safety needs to be the primary concern going forward. To that end, where are we on Phase Three? It's clear that our safety needs to be the primary concern going forward.

Shaun: The level of unrest in the Commonwealth continues to rise, as we're all aware. Your report? Shaun: I will address that issue, but there are other subjects that require our attention first.

Allie: All Institute facilities remain completely secure, with Player Default: Quite right. For far too long we've been dependent on others, on our surroundings. That time is over. Phase Three is, simply, the activation of a nuclear reactor that can provide enough power to the Institute now and forever. Shaun: Phase Three is, simply, the activation of a nuclear reactor that can provide enough power to the Institute now and forever.

Shaun: The reactor is close to ready, but recent tests have determined we have a few tasks ahead of us. Thus, we come to Phase Three. Shaun: It was originally built for the Commonwealth Institute of Technology before the war, but was only for testing. It was originally built for the Commonwealth Institute of Technology before the war, but was only for testing. Over the years we've advanced the technology, made a great many improvements, and are finally nearly ready to activate it.

Shaun: Over the years we've advanced the technology, made a great many improvements, and are finally nearly ready to activate it. The reactor is close to ready, but recent tests have determined we have a few tasks ahead of us. Yes, Doctor Ayo. Previously we would rely on Kellogg for above ground operations, yes?

Well, he is gone. Shaun: While I am not overly fond of putting my own father in harm's way, he has proven more than capable of handling himself. Player Default: Really? There's no shame in being out of the loop, as it were.

The project has been classified for quite a long time. Shaun: I'm not talking about some abstract concept of control, I mean real tangible power. The kind that keeps the lights on. I'm not talking about some abstract concept of control, I mean real tangible power. Shaun: Many compromises and sacrifices have been made over the years to allow progress to continue. Quite right. That is one perspective, yes. But I think we can agree that going forward, no one can consider us weak. I would never disagree that life in the Institute is better than above ground.

We have done much to ensure it. We have, at times, had to rely on drawing power from above-ground installations. It risks personnel and equipment. I'll admit, I'm relieved. It's intended to be something of a classified project, which I'm sure means everyone already knows about it. Shaun: Yes, Doctor Ayo. While I am not overly fond of putting my own father in harm's way, he has proven more than capable of handling himself. While I am not overly fond of putting my own mother in harm's way, she has proven more than capable of handling herself.

It's all right. I wouldn't expect you to have. The project has been classified from the beginning. Clayton: Oh, thank you sir. Isaac and Dean did a great deal of work over the last few months. I'll let them know you're pleased with the result. The Directorate is meeting, and you should be there.

Shaun: That's why I'd like you to take charge of this latest operation. Doctor Filmore can fill you in on the details. There are hard decisions ahead. For all of us, but for you especially. I know that you'll do the right thing. Shaun: I'm sorry, father. I hope it wasn't too presumptuous of me to put you in charge without even asking first Everything, really. Our reactor is nearly ready, my physical condition is worsening, and I had intended to reveal my plans for your taking over.

I must say, it's somewhat embarrassing to attempt to name you as my successor when you can't even be bothered to stay at the meeting. Shaun: Well, I'm not sure how much you heard about the state of the reactor, but it was apparently too much to ask for you to be there for the rest. Shaun: I must say, it's somewhat embarrassing to attempt to name you as my successor when you can't even be bothered to stay at the meeting.

Well, I'm not sure how much you heard about the state of the reactor, but it was apparently too much to ask for you to be there for the rest. The short version is that I am dying, and I had planned to name you as my successor. It's quite disappointing that you walked out. Shaun: I have to admit I simply don't understand how you could walk out of that room while I was in the midst of explaining the state of my health.

Shaun: The short version is that I am dying, and I had planned to name you as my successor. I have to admit I simply don't understand how you could walk out of that room while I was in the midst of explaining the state of my health. In the future, you'll need to consider your priorities more carefully. Being Director will demand much of your attention.

If you're to be the Director someday, people will need to know they can count on you to be there. I hope it wasn't too presumptuous of me I'm sorry, father. Shaun: Everything, really. I'm sorry, mother. Shaun: There's no question that some of the Directorate, and the Institute at large, will need reassurances about your appointment.

Most divisions of the Institute are fairly autonomous, perfectly capable of functioning without intervention. Where those divisions interact, however, problems can arise.

You'd lead the Directorate in setting policy, resolving disputes, and the like. There's no question that some of the Directorate, and the Institute at large, will need reassurances about your appointment.

That's why I'd like you to take charge of this latest operation. Shaun: There are hard decisions ahead. Let's get this Directorate meeting over with before we speak further. Father: Our new guest is familiarizing himself with his surroundings, yet he's already pointed out several inefficiencies in our methods.

Our new guest is familiarizing himself with his surroundings, yet he's already pointed out several inefficiencies in our methods. Player Default: Well maybe it's because I'm the only one who seems to actually be doing anything. Come now. Countless hours have been spent building and readying the reactor. True, you have endured some of the more dangerous missions Father: It is time to announce our presence to the Commonwealth, to request they do not interfere with our plans.

You should be the one to do it. It is time to announce our presence to the Commonwealth, to request they do not interfere with our plans. Yes, that is one goal. And if you are to be the new Director of the Institute, you should be the one to do it. Father: We've prepared some remarks for you to record. Once you're finished, we'll broadcast them to the entire Commonwealth.

Absolutely not. You are to be the Director of the Institute. You are the only reasonable choice for so important a task. There has been too much posturing by too many groups. The world needs to know that we are in power, and the Commonwealth is ours. As the incoming Director it is your responsibility to lead, to establish that place for the Institute's future. Please take this seriously. Player Default: Yes, that is one goal.

We've prepared some remarks for you to record. Father: Use the microphone here, and follow this script. It's quite simple.

I'm sure you'll do fine, father. I'm sure you'll do fine, mother. Father: Before we Father: I've been assured that the necessary parts are on-site. You'll just need to install them to boost the broadcasting power. I've been assured that the necessary parts are on-site. We don't have any other reliable above-ground operatives. And the locals are somewhat familiar with you. This is Decades in the making.

All readings are nominal. So, yes, I think we're ready. Father: No longer will we be forced to compromise to survive. No more will we need worry about outpacing our resources. No longer will we be forced to compromise to survive. Father: And we look forward to achieving even greater things in the future. The Institute is now truly mankind's best hope. And we look forward to achieving even greater things in the future.

I'm not going to attend; you should be there as Director. Father: The Directorate has convened a meeting about how to proceed. If you could, please finish up the speech. We'll need the final recording before we go too much further.

Father: If you will not do this, then you can no longer have a place in the Institute. Do you understand me? If you will not do this, then you can no longer have a place in the Institute. I understand this may not be what you wanted, but I assure you it is necessary. That is not an answer! This must be resolved, right here, right now. Will you do it or not?

Yes, that is what I expect. If we do not exterminate them now, they will continue to threaten our safety. Father: But these people, with their twisted ideology They seek to undermine everything the Institute stands for. Surely you can see that. Player Default: They're determined, and they won't stop.

I'm sure they'd burn this whole place to the ground to free the synths. Father: Surely you can see that you can no longer work with them; that the time has come to put an end to them. For our sake. For our future. Player Default: They want freedom for the synths, that's all. They're not a threat to the Institute. They claim they're about "rights" and "freedom" for synths. But those misguided notions have led to countless acts of violence. Player Default: They want to free the synths.

To suggest they're out to destroy the Institute I think that's too harsh. I've dealt with them far longer than you have. I've seen what they're capable of, the lengths to which they'll go to achieve their objectives. Surely you can see that you can no longer work with them; that the time has come to put an end to them.

Father: I'm afraid this is an order. The Railroad leadership needs to be eliminated. I expect a report when it's done. Father: Because these fanatics cannot be allowed to continue to exist. They represent a very clear threat to the Institute. Because these fanatics cannot be allowed to continue to exist. Father: Small as they are in number, their twisted ideology ensures that they will never stop trying to strike at us.

Small as they are in number, their twisted ideology ensures that they will never stop trying to strike at us. Father: These people are zealots.

They have continually shown no regard for human life, in their bizarre crusade to "free" synths. These people are zealots. Father: They will not listen to reason. They will never accept reality, and so they must be destroyed before they can destroy us.

They will not listen to reason. Father: Please, know that I take no pleasure in this. I have never been one to advocate violence. There is simply no other way. Please, know that I take no pleasure in this. I realize this will be dangerous; please try to stay safe. I'm afraid the time for indecision is behind us. I need to know if you're willing to do this or not, and I need to know now. This isn't about what I want, it's about what needs to happen for us to remain safe.

Now are you willing or not? For the Institute's position in the Commonwealth to be secure, the Railroad must be eliminated. Father: As our primary above-ground operative, and someone who has had previous contact with the Railroad, you are in the best position to carry this out. Father: For the Institute's position in the Commonwealth to be secure, the Railroad must be eliminated. As our primary above-ground operative, and someone who has had previous contact with the Railroad, you are in the best position to carry this out.

I don't enjoy asking you to put yourself in harm's way, but this is so important. I'm sorry, but consider this an order. It must be done. I'll expect a report when they've been eliminated. I'm afraid the time for hesitation has passed. We must act decisively, and we must act now. Will you do it? I'm afraid it is. I take no pleasure in it, but it must be done, for the safety of everyone in the Institute. And it must be done now. Are you willing? Father: The depth of your involvement with them has been called into question, repeatedly.

I'm sure you can guess by whom. What about you? Do you agree with their decision? Player Default: It's the only way we can ensure the Institute's safety. That makes it the right thing to do. Father: It was difficult for them to reach the decision to engage in open hostility. I'm glad you agree. None what comes next will be easy; that conviction may help keep us all going.

Father: You know, father, it's no secret that you worked with the Railroad in order to first reach the Institute. It should be clear by now that if we wait, we will be destroyed. Acting swiftly is the only way to secure our position. Player Default: There's no good answer. Taking action puts us at risk, but inaction could be deadly. The arrival of the Brotherhood's airship was the final straw, really. There's just too much at stake.

Player Default: I'm glad you agree. The depth of your involvement with them has been called into question, repeatedly. Father: You can imagine my relief when I'd learned that you have, apparently, already taken care of that problem. Father: They are insane, and they must be dealt with. That is why I need to know whether you consider them allies. They are insane, and they must be dealt with. There was just no way to compromise with those people. Shaun: We will teach them that we can appear at a moment's notice, wherever we please, and they cannot ever stop us.

And with you leading the charge, how can we fail? You're not wrong, I suppose. There will always be issues that need to be dealt with. But this The Brotherhood of Steel covets technology, and has made it clear that we cannot peacefully co-exist. Shaun: The Brotherhood of Steel covets technology, and has made it clear that we cannot peacefully co-exist. Player Default: I don't know if that's a good idea. They're well fortified; attacking them would be risky.

But the problem with the Brotherhood of Steel goes beyond the edges of the Commonwealth. It's not enough to destroy them here. Shaun: But the problem with the Brotherhood of Steel goes beyond the edges of the Commonwealth. We will show them that if they interfere with us, the very technology they value so highly will be turned against them.

Shaun: We will show them that if they interfere with us, the very technology they value so highly will be turned against them. We will teach them that we can appear at a moment's notice, wherever we please, and they cannot ever stop us.

Shaun: I've already heard the news But of course you wouldn't be here if it weren't a success. Shaun: Don't worry about me. Take care of the Institute. Take care of its people. They're good people. You know that. Don't worry about me. RelaySpeakerRef: After all I've done The lengths to which I've gone to give you a new home, a new life For us to be a family After all I've done RelaySpeakerRef: But you have made your choice.

From this point on, you are an enemy of the Institute. Should you cross us, we will kill you. But you have made your choice. I expected a certain degree of resentment. I could , but that would be a missed opportunity for you to show that you can be the leader these people need. Father: Go now, and be the leader that will secure the Institute's future for generations to come. Player Default: Don't talk like that. You've got plenty of time left, and we have a lot to catch up on.

These men are proud. They might well be prepared to die for their cause. Hopefully, violence won't be necessary, but in the end you must do what's best for the Institute.

Take care of Doctor Filmore, if you would. She's eager, but doesn't have much experience above ground. I dislike resorting to the use of Commonwealth technology, but the advantage it will provide in this case cannot be overlooked.

Shaun: There was no indication that this would be a problem, but the arrival of the team was an unwelcome surprise to mister Wallace. Somewhere along the way, he must've realized we've been monitoring him from a distance. He called in mercenaries to defend him. Shaun: I'm sure they're nothing we can't handle. Ensure the safety of the team and Mr. Wallace, and see that they all arrive back here safely. Shaun: Somewhere along the way, he must've realized we've been monitoring him from a distance.

I'm sure they're nothing we can't handle. While you were working with Dr. Filmore, a small team was dispatched elsewhere in the Commonwealth. Shaun: Dr. Thompson was tasked with Shaun: While you were working with Dr. No, certainly not.

Ordinarily it would never be considered, but this case presented very special circumstances. There was no indication that this would be a problem, but the arrival of the team was an unwelcome surprise to mister Wallace.

That's what Dr. Filmore reported. I'm quite pleased at the results; it would've been a terrible setback to lose that technology to those savages. Shaun: The Brotherhood's intervention must be placed in a larger context, however. Given their penchant for hoarding technology Player Default: That's what Dr. The Brotherhood's intervention must be placed in a larger context, however. Future conflict with them is guaranteed. We are, after all, keepers of the most advanced technology in the Commonwealth, if not beyond.

Shaun: It also cannot go unnoticed that there were Post by Hiram Clawson Can you give a pointer to the definition of a refGene. I'm not sure it is clear what this means as a format. Ann Zweig. Post by Shaun Tyler Thanks Brooke. However, after much Googling I was able to discover that Yes this is the genePred format so maybe your suggestion will be of use. Useful for getting infomation about as many errors as possible.

May be repeated. Database is ignored. Post by Hiram Clawson Post by Shaun Tyler variations and in order to do that it requires annotations to be in. Currently with just a reference sequence we. Is a script available for converting a standard GenBank file or other format into.

Our bioinformatics guys are stretched pretty thin so if there is a.